scgpt.tasks package
scgpt.tasks.grn
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class scgpt.tasks.grn.GeneEmbedding(embeddings: Mapping)[源代码]
基类：object
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static average_vector_results(vec1, vec2, fname)[源代码]
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cluster_definitions_as_df(top_n=20)[源代码]
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compute_similarities(gene, subset=None, feature_type=None)[源代码]
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generate_network(threshold=0.5)[源代码]
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generate_vector(genes)[源代码]
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generate_weighted_vector(genes, weights)[源代码]
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get_adata(resolution=20)[源代码]
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get_metagenes(gdata)[源代码]
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get_similar_genes(vector)[源代码]
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plot_metagene(gdata, mg=None, title='Gene Embedding')[源代码]
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plot_metagenes_scores(adata, metagenes, column, plot=None)[源代码]
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plot_similarities(gene, n_genes=10, save=None)[源代码]
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read_embedding(filename)[源代码]
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static read_vector(vec)[源代码]
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score_metagenes(adata, metagenes)[源代码]